Welcome to BBF
You should have posted with your first problem. Black and white icons just means that the theme you were using previously is no longer installed. It's usually simple to change themes and all would have been fine.
Now, with just a blinking light, you're going to need to follow the instructions here:
How do I wipe the BlackBerry using Jl Cmder? - BlackBerryFAQ
or more than likely this will be required:
What to do next if Jl Cmder will not connect and wipe - BlackBerryFAQ